C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spastic paraplegia 21 (autosomal recessive, Mast syndrome)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000204566 SPG21-001 ENSG00000090487 9606 - 15:64963021-64989936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000204566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000204566 35.402±0.00 36.770±0.00 0.582±0.00 12.527±0.00 15.718±14.75 13.262±11.65 7.211±6.51 17.182±13.81 10.882±4.53 10.998±9.45 6.424±5.04 26.845±0.51 39.195±4.41 26.976±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RY CIL_0007RY_0001 VISTA 15:64785331-65389080
CIL_0004WJ CIL_0004WJ_0002 CGP 15:64911902-64990310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005768 IEA endosome
GO:0005829 IDA cytosol
GO:0008219 IEA cell death
GO:0016020 IEA membrane
GO:0030140 IDA trans-Golgi network transport vesicle
GO:0042609 IPI CD4 receptor binding
GO:0050851 IC antigen receptor-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034955 Spg21-201 protein_coding Mus_musculus 0 1142

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