C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vinculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000211998 VCL-201 ENSG00000035403 9606 + 10:73998114-74120152 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000211998
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000211998 11.847±0.00 25.631±0.00 5.637±0.00 2.471±0.49 16.574±2.72 27.452±7.77 24.882±17.84 11.499±10.52 21.509±18.82 23.938±15.54 16.738±4.53 9.396±5.20 10.674±1.86 18.906±10.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008T CIL_00008T_0001 CGP 10:73995193-74151063

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002009 IMP morphogenesis of an epithelium
GO:0002162 IPI dystroglycan binding
GO:0002576 TAS platelet degranulation
GO:0003779 IDA actin binding
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005911 ISS cell-cell junction
GO:0005912 ISS adherens junction
GO:0005913 IDA cell-cell adherens junction
GO:0005916 IEA fascia adherens
GO:0005925 ISS focal adhesion
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0007155 TAS:IEA cell adhesion
GO:0007160 TAS cell-matrix adhesion
GO:0007596 TAS blood coagulation
GO:0008013 ISS beta-catenin binding
GO:0015629 IEA actin cytoskeleton
GO:0030032 ISS lamellipodium assembly
GO:0030055 NAS cell-substrate junction
GO:0030168 TAS platelet activation
GO:0030334 IEA regulation of cell migration
GO:0030336 TAS negative regulation of cell migration
GO:0031982 IDA vesicle
GO:0034333 IMP adherens junction assembly
GO:0034394 IMP protein localization to cell surface
GO:0043034 ISS costamere
GO:0043234 IDA protein complex
GO:0043297 IMP apical junction assembly
GO:0045294 IPI alpha-catenin binding
GO:0045296 ISS cadherin binding
GO:0048675 IEA axon extension
GO:0051015 IEA actin filament binding
GO:0070062 IDA extracellular vesicular exosome
GO:0070527 IMP platelet aggregation
GO:0090136 IMP epithelial cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022369 Vcl-201 protein_coding Mus_musculus 0 3807
ENSDART00000124167 vcla-001 protein_coding Danio_rerio 0 1770
ENSDART00000039828 vcla-201 protein_coding Danio_rerio 0 1764
ENSDART00000110304 vcla-202 protein_coding Danio_rerio 0 508
ENSMUST00000154460 Ap3m1-001 protein_coding Mus_musculus 0 285
ENSMUST00000122974 Ap3m1-008 processed_transcript Mus_musculus 0 254
ENSMUST00000131469 Ap3m1-009 processed_transcript Mus_musculus 0 252

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