C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000216277 PAPOLA-001 ENSG00000090060 9606 + 14:96502373-96567111 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216277
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216277 20.531±0.00 18.137±0.00 3.182±0.00 5.956±0.00 13.355±2.89 18.145±12.79 11.530±7.85 11.066±3.94 11.549±0.66 9.829±5.43 11.517±0.00 19.003±8.73 15.807±1.15 27.001±10.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HI CIL_0003HI_0001 CGP 14:96392111-96567111
CIL_0003HJ CIL_0003HJ_0001 CGP 14:96501433-96931722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0004652 ISS:IEA polynucleotide adenylyltransferase activity
GO:0005524 ISS ATP binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016779 IEA nucleotidyltransferase activity
GO:0030145 ISS manganese ion binding
GO:0031123 IEA RNA 3'-end processing
GO:0031124 TAS mRNA 3'-end processing
GO:0043631 ISS:IEA RNA polyadenylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109901 Papola-001 protein_coding Mus_musculus 0 4747
ENSMUST00000169938 Papola-004 nonsense_mediated_decay Mus_musculus 0 3849
ENSMUST00000021535 Papola-003 nonsense_mediated_decay Mus_musculus 0 3583
ENSMUST00000168186 Papola-002 protein_coding Mus_musculus 0 3334
ENSMUST00000163473 Papola-009 protein_coding Mus_musculus 0 3134
ENSMUST00000170002 Papola-010 protein_coding Mus_musculus 0 2988
ENSMUST00000166329 Papola-008 nonsense_mediated_decay Mus_musculus 0 2538
ENSMUST00000099400 Papolb-001 protein_coding Mus_musculus 0 2023
ENSMUST00000166498 Papola-005 retained_intron Mus_musculus 0 1980
ENSMUST00000118939 Gm14245-001 processed_pseudogene Mus_musculus 0 1705
ENSMUST00000166471 Papola-011 protein_coding Mus_musculus 0 1589
ENSMUST00000166735 Papola-007 protein_coding Mus_musculus 0 1435
ENSMUST00000163805 Papola-006 retained_intron Mus_musculus 0 1367
ENSMUST00000164798 Papola-019 protein_coding Mus_musculus 0 1304
ENSMUST00000165584 Papola-013 processed_transcript Mus_musculus 0 948
ENSMUST00000170540 Papola-015 protein_coding Mus_musculus 0 918
ENSMUST00000172040 Papola-012 processed_transcript Mus_musculus 0 876
ENSMUST00000169524 Papola-017 nonsense_mediated_decay Mus_musculus 0 693
ENSMUST00000170831 Papola-016 retained_intron Mus_musculus 0 411
ENSMUST00000164326 Papola-014 nonsense_mediated_decay Mus_musculus 0 409
ENSMUST00000172089 Papola-020 protein_coding Mus_musculus 0 388
ENSMUST00000170189 Papola-018 retained_intron Mus_musculus 2e-35 156

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