C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 20 open reading frame 27
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217195 C20orf27-002 ENSG00000101220 9606 - 20:3753508-3767728 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000217195
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000217195 11.740±0.00 11.668±0.00 0.234±0.00 2.924±0.00 11.078±0.00 29.482±0.00 1.501±1.33 4.664±0.00 1.347±0.00 2.790±0.00 2.735±0.00 17.501±5.10 8.840±1.39 6.329±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033D CIL_00033D_0001 CGP 20:3753508-3781448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103188 1700037H04Rik-001 protein_coding Mus_musculus 0 765
ENSMUST00000028800 1700037H04Rik-002 protein_coding Mus_musculus 0 619
ENSMUST00000136838 1700037H04Rik-004 retained_intron Mus_musculus 0 573
ENSMUST00000184535 1700037H04Rik-003 nonsense_mediated_decay Mus_musculus 0 573
ENSMUST00000133602 1700037H04Rik-005 protein_coding Mus_musculus 0 486
ENSMUST00000184121 1700037H04Rik-006 nonsense_mediated_decay Mus_musculus 0 429

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