C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221922 CCDC9-001 ENSG00000105321 9606 + 19:47256459-47271953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221922 12.237±0.00 23.377±0.00 0.560±0.00 1.934±0.94 5.952±5.14 3.463±2.86 5.683±0.00 3.403±3.05 2.556±0.00 24.974±0.00 13.367±0.00 10.662±13.89 3.625±1.50 16.084±9.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G1 CIL_0008G1_0001 VISTA 19:46806794-47408636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118976 Ccdc9-002 protein_coding Mus_musculus 0 1197
ENSMUST00000041010 Ccdc9-001 protein_coding Mus_musculus 0 1190
ENSMUST00000129447 Ccdc9-010 retained_intron Mus_musculus 0 612
ENSMUST00000174270 Ccdc9-014 protein_coding Mus_musculus 0 346
ENSMUST00000124084 Ccdc9-003 retained_intron Mus_musculus 0 331
ENSMUST00000150528 Ccdc9-005 protein_coding Mus_musculus 0 279
ENSMUST00000137993 Ccdc9-009 processed_transcript Mus_musculus 0 265
ENSMUST00000146609 Ccdc9-004 protein_coding Mus_musculus 0 263
ENSMUST00000144186 Ccdc9-006 retained_intron Mus_musculus 0 263
ENSMUST00000145519 Ccdc9-008 protein_coding Mus_musculus 1.4013e-45 189
ENSMUST00000148741 Ccdc9-007 nonsense_mediated_decay Mus_musculus 6e-38 163

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