C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000221975 RPS19-005 ENSG00000105372 9606 + 19:41860257-41871416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221975
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221975 347.291±0.00 920.626±0.00 139.243±0.00 118.194±41.47 430.529±0.00 772.234±297.81 36.965±0.00 226.402±12.01 244.570±0.00 223.895±0.00 173.525±0.00 1317.099±816.90 1537.463±373.99 479.599±41.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WP CIL_0003WP_0001 CGP 19:41844743-41872926
CIL_0003W3 CIL_0003W3_0001 CGP 19:41859918-41881372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108430 Rps19-001 protein_coding Mus_musculus 0 706
ENSMUST00000108429 Rps19-006 protein_coding Mus_musculus 0 693
ENSMUST00000181233 Rps19-ps6-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000091925 Rps19-ps4-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000168472 Rps19-ps1-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000100614 Rps19-ps2-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000108428 Rps19-003 protein_coding Mus_musculus 0 604
ENSMUST00000116122 Rps19-ps7-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000124035 Rps19-008 protein_coding Mus_musculus 0 593
ENSMUST00000153451 Rps19-005 protein_coding Mus_musculus 0 575
ENSMUST00000116174 Rps19-ps3-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000156372 Rps19-007 protein_coding Mus_musculus 0 553
ENSMUST00000161787 Rps19-ps9-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000159750 Rps19-ps10-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000160308 Rps19-ps11-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000180504 Rps19-ps13-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000181937 Rps19-ps12-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000180714 Rps19-ps8-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000129847 Rps19-004 nonsense_mediated_decay Mus_musculus 0 444
ENSMUST00000130335 Rps19-010 processed_transcript Mus_musculus 0 442
ENSMUST00000180745 Rps19-ps5-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000119684 Gm9516-001 processed_pseudogene Mus_musculus 0 409
ENSMUST00000119451 Gm14861-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000119674 Gm15504-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000119807 Gm15745-001 processed_pseudogene Mus_musculus 6.00036e-42 174
ENSMUST00000146004 Rps19-009 processed_transcript Mus_musculus 8.00001e-41 171
ENSMUST00000121832 Rps19-ps14-001 processed_pseudogene Mus_musculus 1e-38 163
ENSMUST00000138662 Rps19-002 retained_intron Mus_musculus 2e-32 143

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