C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leukocyte receptor cluster (LRC) member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222224 LENG1-001 ENSG00000105617 9606 - 19:54155161-54159882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222224 6.544±0.00 18.878±0.00 0.660±0.00 3.378±2.82 5.715±4.86 6.912±6.04 2.501±1.79 11.844±0.00 2.904±1.76 5.618±4.97 9.814±0.00 20.362±0.47 11.286±2.15 18.923±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OD CIL_0005OD_0001 CGP 19:54115410-54155681
CIL_0001U4 CIL_0001U4_0001 CGP 19:54137728-54159882
CIL_0001GV CIL_0001GV_0001 CGP 19:54155161-54173250

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019878 Leng1-001 protein_coding Mus_musculus 0 1354
ENSMUST00000144097 Cnot3-004 retained_intron Mus_musculus 0 597
ENSMUST00000160200 Cnot3-007 protein_coding Mus_musculus 0 590
ENSMUST00000143085 Cnot3-001 retained_intron Mus_musculus 0 555
ENSMUST00000129973 Cnot3-005 retained_intron Mus_musculus 0 540
ENSMUST00000038913 Cnot3-002 protein_coding Mus_musculus 0 540

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