C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000222726 HOXA5-001 ENSG00000106004 9606 - 7:27141052-27143668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000222726
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000222726 1.234±0.00 5.326±0.00 2.457±0.00 4.078±2.23 4.910±1.21 0.044±0.00 5.781±5.74 1.093±0.97 7.167±2.77 1.834±0.31 1.766±1.43 0.189±0.08 1.783±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PB CIL_0003PB_0001 CGP 7:27128507-27143668
CIL_0003PC CIL_0003PC_0001 CGP 7:27141052-27150603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0002009 IEA morphogenesis of an epithelium
GO:0003016 IEA respiratory system process
GO:0003677 IDA:IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IEA pattern specification process
GO:0007585 IEA respiratory gaseous exchange
GO:0009952 IEA anterior/posterior pattern specification
GO:0010870 IDA positive regulation of receptor biosynthetic process
GO:0016477 IEA cell migration
GO:0016525 IMP negative regulation of angiogenesis
GO:0030324 IEA lung development
GO:0030878 IEA thyroid gland development
GO:0033599 IEA regulation of mammary gland epithelial cell proliferation
GO:0035264 IEA multicellular organism growth
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045639 IDA positive regulation of myeloid cell differentiation
GO:0045647 IDA negative regulation of erythrocyte differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048286 IEA lung alveolus development
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development
GO:0060435 IEA bronchiole development
GO:0060439 IEA trachea morphogenesis
GO:0060441 IEA epithelial tube branching involved in lung morphogenesis
GO:0060480 IEA lung goblet cell differentiation
GO:0060481 IEA lobar bronchus epithelium development
GO:0060484 IEA lung-associated mesenchyme development
GO:0060535 IEA trachea cartilage morphogenesis
GO:0060536 IEA cartilage morphogenesis
GO:0060574 IEA intestinal epithelial cell maturation
GO:0060638 IEA mesenchymal-epithelial cell signaling
GO:0060644 IEA mammary gland epithelial cell differentiation
GO:0060749 IEA mammary gland alveolus development
GO:0060764 IEA cell-cell signaling involved in mammary gland development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048794 Hoxa5-001 protein_coding Mus_musculus 0 2442
ENSMUST00000049352 Hoxb7-001 protein_coding Mus_musculus 2e-26 124
ENSMUST00000000704 Hoxb6-201 protein_coding Mus_musculus 5e-23 113
ENSMUST00000173432 Hoxb6-001 protein_coding Mus_musculus 5e-23 113
ENSMUST00000168043 Hoxb8-201 protein_coding Mus_musculus 5e-23 113
ENSMUST00000052650 Hoxb8-001 protein_coding Mus_musculus 5e-23 113
ENSMUST00000151596 Hoxb7-002 processed_transcript Mus_musculus 0.0000000000005 81
ENSMUST00000125410 Hoxb8-002 protein_coding Mus_musculus 0.000000001 69
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0.00000005 64
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0.00000005 64
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0.0000006 60
ENSMUST00000190553 Hoxd3-008 retained_intron Mus_musculus 0.0000006 60
ENSMUST00000140666 Hoxd3-007 protein_coding Mus_musculus 0.0000006 60
ENSMUST00000047830 Hoxd3-005 protein_coding Mus_musculus 0.0000006 60
ENSMUST00000111982 Hoxd3-004 protein_coding Mus_musculus 0.0000006 60
ENSMUST00000111983 Hoxd3-001 protein_coding Mus_musculus 0.0000006 60
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 0.0000006 60
ENSMUST00000100523 Hoxb2-001 protein_coding Mus_musculus 0.00003 55
ENSMUST00000182030 Hoxb2-002 retained_intron Mus_musculus 0.00003 55

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