C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 11 open reading frame 58
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228136 C11orf58-001 ENSG00000110696 9606 + 11:16738401-16756223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228136 26.710±0.00 25.642±0.00 20.780±0.00 42.210±14.51 26.596±0.89 30.940±7.53 24.441±1.51 27.995±0.86 26.003±11.59 26.457±1.65 12.264±0.57 41.426±6.62 31.826±4.34 41.774±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZR CIL_0003ZR_0001 CGP 11:15112424-16739591
CIL_00081X CIL_00081X_0001 VISTA 11:16056231-16657544
CIL_0008LR CIL_0008LR_0001 VISTA 11:16101723-16704491
CIL_000836 CIL_000836_0001 VISTA 11:16591589-17196198
CIL_0003ZQ CIL_0003ZQ_0001 CGP 11:16613132-17014443

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032899 1110004F10Rik-001 protein_coding Mus_musculus 0 1079
ENSMUST00000151254 1110004F10Rik-003 nonsense_mediated_decay Mus_musculus 0 944
ENSMUST00000106608 1110004F10Rik-004 protein_coding Mus_musculus 0 904
ENSMUST00000106607 1110004F10Rik-002 protein_coding Mus_musculus 0 676
ENSMUST00000182930 Gm9169-001 processed_pseudogene Mus_musculus 0 555

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