C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230050 RPS12-001 ENSG00000112306 9606 + 6:132814441-132817564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230050 626.524±0.00 787.755±0.00 22.782±0.00 193.937±114.10 319.259±200.06 464.254±322.83 134.969±95.19 273.486±159.67 266.522±118.76 618.116±510.14 274.645±192.54 2269.877±1464.02 1358.970±133.12 639.977±67.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014O CIL_00014O_0002 CGP 6:132814441-133532120

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005829 TAS cytosol
GO:0006412 IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086764 Rps12-ps3-201 protein_coding Mus_musculus 0 636
ENSMUST00000073926 Rps12-201 protein_coding Mus_musculus 0 630
ENSMUST00000183090 Rps12l1-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000117447 Rps12-ps10-001 processed_pseudogene Mus_musculus 0 540
ENSMUST00000139165 Rps12-ps9-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119773 Rps12-ps19-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000179356 Rps12-ps14-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000178365 Rps12-ps13-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000179567 Rps12-ps15-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000179020 Rps12-ps12-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000178427 Rps12-ps11-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000179067 Rps12-ps17-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000179420 Rps12-ps18-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000179239 Rps12-ps6-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000168843 Gm4925-002 processed_transcript Mus_musculus 0 483
ENSMUST00000121168 Rps12-ps20-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000179414 Rps12-ps23-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000179382 Rps12-ps22-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000178172 Rps12-ps21-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000118272 Rps12-ps5-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000092231 Gm4925-001 transcribed_processed_pseudogene Mus_musculus 0 453
ENSMUST00000182321 Rps12l2-001 processed_pseudogene Mus_musculus 0 451

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