C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230085 SNX3-001 ENSG00000112335 9606 - 6:108211222-108261260 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230085 8.519±0.00 13.537±0.00 6.873±0.00 28.856±12.14 14.902±2.77 11.813±0.20 10.239±2.12 14.842±1.95 11.357±5.76 11.196±0.86 6.947±0.54 37.417±15.53 36.020±12.26 21.446±7.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377
CIL_0008G4 CIL_0008G4_0001 VISTA 6:107814126-108415302
CIL_0009BP CIL_0009BP_0001 VISTA 6:107816039-108417248

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005769 IDA early endosome
GO:0005829 IDA cytosol
GO:0006886 IBA intracellular protein transport
GO:0010008 IDA endosome membrane
GO:0010324 IDA membrane invagination
GO:0019903 IPI protein phosphatase binding
GO:0031901 IDA early endosome membrane
GO:0032266 IDA phosphatidylinositol-3-phosphate binding
GO:0032268 IEA regulation of cellular protein metabolic process
GO:0033157 IEA regulation of intracellular protein transport
GO:0033572 IEA transferrin transport
GO:0035091 IEA phosphatidylinositol binding
GO:0042177 IDA negative regulation of protein catabolic process
GO:0042541 IBA hemoglobin biosynthetic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046597 IDA negative regulation of viral entry into host cell
GO:0051224 IDA negative regulation of protein transport
GO:0070062 IDA extracellular vesicular exosome
GO:0070676 IMP intralumenal vesicle formation
GO:2000642 IDA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019939 Snx3-001 protein_coding Mus_musculus 0 1212
ENSMUST00000105499 Snx3-003 protein_coding Mus_musculus 0 749
ENSMUST00000105500 Snx3-002 protein_coding Mus_musculus 0 499

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