C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA box binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230354 TBP-001 ENSG00000112592 9606 + 6:170554379-170572870 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverOvaryPlacentaTestisENST00000230354
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Ovary Placenta Testis
ENST00000230354 0.958±0.00 1.955±0.00 0.414±0.00 0.986±0.67 0.110±0.00 0.301±0.00 1.869±0.00 2.835±0.14 2.412±1.56 5.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018G CIL_00018G_0001 CGP 6:170535117-170572870
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005672 IDA transcription factor TFIIA complex
GO:0005719 IDA nuclear euchromatin
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 IC transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006383 IDA transcription from RNA polymerase III promoter
GO:0008134 IPI transcription factor binding
GO:0008219 IEA cell death
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0044212 IDA transcription regulatory region DNA binding
GO:0070491 IPI repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117593 Tbp-004 protein_coding Mus_musculus 0 948
ENSMUST00000014911 Tbp-003 protein_coding Mus_musculus 0 948
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 948
ENSMUST00000153480 Tbp-008 protein_coding Mus_musculus 0 736
ENSMUST00000119879 Tbp-011 protein_coding Mus_musculus 0 656
ENSDART00000016211 tbp-001 protein_coding Danio_rerio 0 523
ENSMUST00000118001 Tbp-002 protein_coding Mus_musculus 0 453
ENSMUST00000147081 Tbp-006 protein_coding Mus_musculus 0 339
ENSMUST00000149518 Tbp-009 retained_intron Mus_musculus 0 274

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