C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A, pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000230495 H3F3AP6-001 ENSG00000178458 9606 - 4:139698144-139698554 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230495 0.148±0.00 0.310±0.00 0.208±0.00 0.173±0.00 0.833±0.62 0.811±0.71 1.562±1.45 0.047±0.00 0.050±0.00 0.045±0.00 0.145±0.00 0.322±0.20 0.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LB CIL_0008LB_0001 VISTA 4:139461710-140065132
CIL_00046M CIL_00046M_0002 CGP 4:139495941-139740745
CIL_0008EB CIL_0008EB_0001 VISTA 4:139508122-140109241
CIL_0004PB CIL_0004PB_0001 CGP 4:139665768-140154184

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 654
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 654
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 638
ENSMUST00000077016 Gm6421-201 processed_pseudogene Mus_musculus 0 638
ENSMUST00000081026 H3f3a-006 protein_coding Mus_musculus 0 634
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000121118 Gm13529-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 577
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 571
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 556
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000121683 Gm12950-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000179046 Gm7426-201 pseudogene Mus_musculus 0 527
ENSMUST00000183321 Gm26980-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000117894 Gm14529-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000159441 H3f3a-005 retained_intron Mus_musculus 0 451
ENSMUST00000118436 Gm13349-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000116640 Gm14807-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000119660 Gm8757-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000118617 Gm12513-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000162118 H3f3a-002 protein_coding Mus_musculus 0 279
ENSMUST00000159685 H3f3a-004 protein_coding Mus_musculus 0 270
ENSMUST00000137042 Gm15905-001 processed_pseudogene Mus_musculus 0 235

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