C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor suppressor candidate 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000232496 TUSC2-001 ENSG00000114383 9606 - 3:50324907-50328243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000232496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000232496 6.935±0.00 16.114±0.00 2.202±0.00 13.699±4.03 5.930±3.11 5.741±3.23 7.707±6.74 8.783±6.90 10.916±0.00 11.327±0.00 8.432±5.15 10.092±5.07 24.995±3.71 19.604±2.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0001 VISTA 3:50299047-50902727
CIL_0003FI CIL_0003FI_0002 CGP 3:50317790-50328251

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001779 IEA natural killer cell differentiation
GO:0005739 IEA mitochondrion
GO:0006909 IEA phagocytosis
GO:0006954 IEA inflammatory response
GO:0007049 IEA cell cycle
GO:0007267 TAS cell-cell signaling
GO:0008283 TAS cell proliferation
GO:0032618 IEA interleukin-15 production
GO:0032700 IEA negative regulation of interleukin-17 production
GO:0032733 IEA positive regulation of interleukin-10 production
GO:0048469 IEA cell maturation
GO:0050829 IEA defense response to Gram-negative bacterium
GO:0051881 IEA regulation of mitochondrial membrane potential
GO:0052567 IEA response to defense-related host reactive oxygen species production
GO:0070945 IEA neutrophil mediated killing of gram-negative bacterium
GO:0071609 IEA chemokine (C-C motif) ligand 5 production
GO:2000377 IEA regulation of reactive oxygen species metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000010198 Tusc2-201 protein_coding Mus_musculus 0 1146
ENSMUST00000117128 Gm12452-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000121981 Gm12453-001 processed_pseudogene Mus_musculus 0 342

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