C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-fold modifier 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239878 UFM1-001 ENSG00000120686 9606 + 13:38349881-38363619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000239878
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000239878 1.129±0.00 8.724±0.00 5.652±0.00 5.615±0.00 3.229±0.00 8.639±0.00 4.899±0.00 4.656±0.00 0.679±0.00 10.575±6.74 5.899±6.55 6.044±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CS CIL_0006CS_0002 CGP 13:37636636-38363619
CIL_0000HL CIL_0000HL_0002 CGP 13:38349849-38887131

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0034976 IDA response to endoplasmic reticulum stress
GO:0070062 IDA extracellular vesicular exosome
GO:0071569 IDA protein ufmylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000146598 Ufm1-001 protein_coding Mus_musculus 0 448
ENSMUST00000148338 Ufm1-003 retained_intron Mus_musculus 0 433
ENSMUST00000122330 Ufm1-004 protein_coding Mus_musculus 0 291
ENSMUST00000152414 Ufm1-005 retained_intron Mus_musculus 0 228
ENSMUST00000029309 Ufm1-002 nonsense_mediated_decay Mus_musculus 0 228

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