C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 10 (all-trans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240285 RDH10-001 ENSG00000121039 9606 + 8:73294612-73325281 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240285 10.348±0.00 2.819±0.00 4.918±0.00 1.567±0.63 5.472±3.82 3.986±0.95 1.372±0.84 10.367±6.39 4.760±1.33 5.532±2.48 0.358±0.08 5.866±3.85 7.386±4.58 3.083±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011X CIL_00011X_0001 CGP 8:73241329-73295789
CIL_0005C3 CIL_0005C3_0002 CGP 8:73290267-73325281
CIL_0001D6 CIL_0001D6_0001 CGP 8:73294612-73747708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001656 IEA metanephros development
GO:0001701 IEA in utero embryonic development
GO:0002138 IEA retinoic acid biosynthetic process
GO:0004745 IDA retinol dehydrogenase activity
GO:0005737 IDA cytoplasm
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007601 IDA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0008406 IEA gonad development
GO:0009887 IEA organ morphogenesis
GO:0014032 IEA neural crest cell development
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0031076 IEA embryonic camera-type eye development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042572 IEA retinol metabolic process
GO:0042574 IDA retinal metabolic process
GO:0043583 IEA ear development
GO:0043584 IEA nose development
GO:0044297 IEA cell body
GO:0048568 IEA embryonic organ development
GO:0048703 IEA embryonic viscerocranium morphogenesis
GO:0052650 IEA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process
GO:0060431 IEA primary lung bud formation
GO:0060449 IEA bud elongation involved in lung branching

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027053 Rdh10-001 protein_coding Mus_musculus 0 1570
ENSMUST00000152626 Rdh10-002 retained_intron Mus_musculus 0 442

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