C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243082 HOXC11-002 ENSG00000123388 9606 + 12:53973128-53976419 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000243082
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000243082 1.392±0.00 0.828±0.00 0.014±0.00 0.125±0.00 0.101±0.00 0.616±0.00 0.683±0.00 2.260±2.64 0.395±0.21 0.765±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TO CIL_0002TO_0002 CGP 12:53954834-53977643
CIL_00003G CIL_00003G_0001 CGP 12:53973126-53990279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001701 Hoxc11-001 protein_coding Mus_musculus 0 2084

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