C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000245838 THOC2-201 ENSG00000125676 9606 - X:123600562-123733054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245838
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245838 1.919±0.00 2.001±0.00 1.872±0.80 1.712±0.00 1.771±0.00 1.768±0.00 1.830±0.00 0.489±0.00 0.724±0.00 0.856±0.20 2.313±1.03 1.467±0.47 1.732±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0001 CGP X:123184153-123733056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0000347 IDA THO complex
GO:0000445 IDA THO complex part of transcription export complex
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0006397 IEA mRNA processing
GO:0006406 IDA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0016973 IDA poly(A)+ mRNA export from nucleus
GO:0046784 IDA viral mRNA export from host cell nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047037 Thoc2-001 protein_coding Mus_musculus 0 7068
ENSMUST00000096452 BC005561-201 protein_coding Mus_musculus 0 5746
ENSMUST00000150443 Thoc2-006 retained_intron Mus_musculus 0 1808
ENSMUST00000151802 Thoc2-005 retained_intron Mus_musculus 0 1729
ENSMUST00000127338 Thoc2-002 retained_intron Mus_musculus 0 1711
ENSMUST00000129915 Thoc2-018 nonsense_mediated_decay Mus_musculus 0 1245
ENSMUST00000124458 Thoc2-008 protein_coding Mus_musculus 0 767
ENSMUST00000151430 Thoc2-010 nonsense_mediated_decay Mus_musculus 0 763
ENSMUST00000123512 Thoc2-009 processed_transcript Mus_musculus 0 750
ENSMUST00000134084 Thoc2-011 processed_transcript Mus_musculus 0 612
ENSMUST00000143557 Thoc2-014 protein_coding Mus_musculus 0 503
ENSMUST00000155369 Thoc2-015 protein_coding Mus_musculus 0 438
ENSMUST00000145586 Thoc2-016 protein_coding Mus_musculus 0 346
ENSMUST00000130993 Thoc2-012 retained_intron Mus_musculus 0 335

Loading