C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELK1, member of ETS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000247161 ELK1-001 ENSG00000126767 9606 - X:47635521-47650488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLungOvaryPlacentaTestisENST00000247161
Transcript ID Adipose Brain Breast Colon Lung Ovary Placenta Testis
ENST00000247161 4.297±0.00 2.070±1.22 0.246±0.00 3.325±0.00 3.511±0.00 14.999±10.11 2.810±1.12 6.027±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000577 CIL_000577_0001 CGP X:47624213-47650604
CIL_000578 CIL_000578_0001 CGP X:47635521-47659161

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002755 TAS MyD88-dependent toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0003700 IEA:IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0034134 TAS toll-like receptor 2 signaling pathway
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0034146 TAS toll-like receptor 5 signaling pathway
GO:0034162 TAS toll-like receptor 9 signaling pathway
GO:0034166 TAS toll-like receptor 10 signaling pathway
GO:0035666 TAS TRIF-dependent toll-like receptor signaling pathway
GO:0038123 TAS toll-like receptor TLR1:TLR2 signaling pathway
GO:0038124 TAS toll-like receptor TLR6:TLR2 signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045087 TAS innate immune response
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0051403 TAS stress-activated MAPK cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009550 Elk1-001 protein_coding Mus_musculus 0 2420
ENSMUST00000148133 Elk1-002 retained_intron Mus_musculus 0 394
ENSMUST00000129899 Uxt-004 processed_transcript Mus_musculus 6e-19 100

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