C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249377 LRRC17-001 ENSG00000128606 9606 + 7:102913005-102944949 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartENST00000249377
Transcript ID Adrenal Heart
ENST00000249377 0.740±0.00 0.389±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0001 VISTA 7:102540897-103142421
CIL_0005CF CIL_0005CF_0001 CGP 7:102748971-103074843
CIL_0005CK CIL_0005CK_0001 CGP 7:102813230-103074843
CIL_0005CL CIL_0005CL_0001 CGP 7:102912991-103099764

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005615 ISS extracellular space
GO:0045671 ISS negative regulation of osteoclast differentiation
GO:0048539 ISS bone marrow development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035651 Lrrc17-201 protein_coding Mus_musculus 0 970
ENSMUST00000051358 Fbxl13-001 protein_coding Mus_musculus 1e-19 102
ENSMUST00000115234 Fbxl13-003 protein_coding Mus_musculus 2e-17 95
ENSMUST00000137788 Fbxl13-002 retained_intron Mus_musculus 2e-17 95

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