C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exoribonuclease 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000250263 ERI1-201 ENSG00000104626 9606 + 8:9002804-9033339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250263 2.497±0.00 1.597±0.00 0.515±0.00 0.501±0.10 2.009±0.13 1.296±0.12 0.551±0.13 1.495±0.14 1.326±0.39 1.488±0.47 0.361±0.19 1.916±0.33 2.968±1.08 5.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006X CIL_00006X_0002 CGP 8:8783354-9116746
CIL_00006W CIL_00006W_0002 CGP 8:9002147-9151574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0005737 ISS cytoplasm
GO:0008408 IDA 3'-5' exonuclease activity
GO:0019843 ISS rRNA binding
GO:0031047 IEA gene silencing by RNA
GO:0031125 ISS rRNA 3'-end processing
GO:0043022 ISS ribosome binding
GO:0046872 IEA metal ion binding
GO:0071204 ISS histone pre-mRNA 3'end processing complex
GO:0071207 ISS histone pre-mRNA stem-loop binding
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033927 Eri1-201 protein_coding Mus_musculus 0 1000

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