C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 4 associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252015 TRPC4AP-001 ENSG00000100991 9606 - 20:35002404-35092871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252015
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252015 9.530±0.00 6.632±0.00 8.054±1.47 8.733±5.13 4.682±0.04 4.013±2.54 9.628±5.22 7.247±0.00 6.363±0.00 8.796±2.87 12.198±4.63 20.442±0.59 10.925±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005BE CIL_0005BE_0001 CGP 20:34928430-35002437
CIL_0006RZ CIL_0006RZ_0002 CGP 20:34975403-35092871
CIL_0006AB CIL_0006AB_0001 CGP 20:35002404-35147364

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0016567 IEA protein ubiquitination
GO:0019902 IDA phosphatase binding
GO:0031464 IDA Cul4A-RING E3 ubiquitin ligase complex
GO:0034220 TAS ion transmembrane transport
GO:0055085 TAS transmembrane transport
GO:0070588 TAS calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041059 Trpc4ap-001 protein_coding Mus_musculus 0 3432
ENSMUST00000103140 Trpc4ap-002 protein_coding Mus_musculus 0 3269
ENSMUST00000152548 Trpc4ap-003 retained_intron Mus_musculus 0 1635
ENSMUST00000130755 Trpc4ap-004 retained_intron Mus_musculus 0 1454
ENSMUST00000140370 Trpc4ap-005 retained_intron Mus_musculus 0 730
ENSDART00000019450 trpc4apa-001 protein_coding Danio_rerio 0 684
ENSMUST00000153246 Trpc4ap-010 processed_transcript Mus_musculus 0 619
ENSDART00000006482 trpc4apb-201 protein_coding Danio_rerio 0 562
ENSDART00000128126 trpc4apa-201 protein_coding Danio_rerio 0 440
ENSMUST00000143115 Trpc4ap-009 retained_intron Mus_musculus 0 333
ENSMUST00000146484 Trpc4ap-008 retained_intron Mus_musculus 0 233
ENSMUST00000147913 Trpc4ap-007 retained_intron Mus_musculus 6e-40 171

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