C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (DNA-directed), delta interacting protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252115 POLDIP3-001 ENSG00000100227 9606 - 22:42583721-42614962 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252115 12.625±0.00 7.119±0.00 1.759±0.00 6.905±6.10 8.551±7.14 12.144±0.00 5.343±4.10 24.955±0.00 5.854±2.68 11.891±6.08 13.111±0.00 28.552±25.37 19.841±9.15 15.967±6.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LM CIL_0004LM_0001 CGP 22:42583721-42649568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 IDA transcription export complex
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005737 TAS cytoplasm
GO:0016607 IDA nuclear speck
GO:0016973 IDA poly(A)+ mRNA export from nucleus
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058793 Poldip3-001 protein_coding Mus_musculus 0 1720
ENSMUST00000149802 Poldip3-002 retained_intron Mus_musculus 0 652
ENSMUST00000150926 Poldip3-004 retained_intron Mus_musculus 0 540
ENSMUST00000129372 Poldip3-005 protein_coding Mus_musculus 0 536
ENSMUST00000100375 Poldip3-003 protein_coding Mus_musculus 0 536

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