C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252999 LAMA5-001 ENSG00000130702 9606 - 20:62309065-62367312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000252999
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000252999 12.530±0.00 10.117±0.00 1.184±0.00 4.114±2.86 4.234±3.28 3.481±2.88 4.552±4.02 2.218±1.13 9.478±0.00 10.775±8.45 22.454±6.71 7.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000692 CIL_000692_0002 CGP 20:62231922-62308862
CIL_000691 CIL_000691_0002 CGP 20:62302093-62367312
CIL_0001DP CIL_0001DP_0001 CGP 20:62307955-62388520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 NAS angiogenesis
GO:0001658 IEA branching involved in ureteric bud morphogenesis
GO:0001738 IEA morphogenesis of a polarized epithelium
GO:0001755 IEA neural crest cell migration
GO:0001942 IEA hair follicle development
GO:0005102 IEA receptor binding
GO:0005178 IDA integrin binding
GO:0005198 IC structural molecule activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 NAS basal lamina
GO:0005606 IEA laminin-1 complex
GO:0005610 IEA laminin-5 complex
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0007010 NAS cytoskeleton organization
GO:0007155 IEA cell adhesion
GO:0007229 IMP integrin-mediated signaling pathway
GO:0007517 IEA muscle organ development
GO:0008037 NAS cell recognition
GO:0008283 NAS cell proliferation
GO:0009790 NAS embryo development
GO:0009887 IEA organ morphogenesis
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0016477 IDA cell migration
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 NAS cell differentiation
GO:0030155 IEA regulation of cell adhesion
GO:0030198 TAS extracellular matrix organization
GO:0030324 IEA lung development
GO:0030334 IEA regulation of cell migration
GO:0031012 IDA extracellular matrix
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0042127 IEA regulation of cell proliferation
GO:0042384 IEA cilium assembly
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043259 IDA laminin-10 complex
GO:0043260 TAS laminin-11 complex
GO:0045446 NAS endothelial cell differentiation
GO:0045995 IEA regulation of embryonic development
GO:0048041 NAS focal adhesion assembly
GO:0048754 IEA branching morphogenesis of an epithelial tube
GO:0060445 IEA branching involved in salivary gland morphogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0090002 IEA establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000015791 Lama5-001 protein_coding Mus_musculus 0 8257
ENSMUST00000092070 Lama3-001 protein_coding Mus_musculus 0 231

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