C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253023 UBE2M-001 ENSG00000130725 9606 - 19:58555712-58558960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253023
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253023 44.821±0.00 38.302±0.00 0.516±0.00 51.250±46.09 21.475±20.08 23.458±21.43 20.531±18.98 18.728±18.38 10.992±8.31 22.882±22.46 35.233±34.03 32.766±20.55 56.293±2.67 59.129±4.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070T CIL_00070T_0001 CGP 19:58551566-58558960
CIL_0003CJ CIL_0003CJ_0001 CGP 19:58555712-58573575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005829 TAS cytosol
GO:0006464 IMP cellular protein modification process
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008152 IEA metabolic process
GO:0016567 IMP protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0018169 IDA ribosomal S6-glutamic acid ligase activity
GO:0019788 IDA NEDD8 ligase activity
GO:0043525 IEA positive regulation of neuron apoptotic process
GO:0045116 IEA protein neddylation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005714 Ube2m-001 protein_coding Mus_musculus 0 1424
ENSMUST00000165394 Ube2m-201 protein_coding Mus_musculus 0 1122
ENSMUST00000131837 Ube2m-004 processed_transcript Mus_musculus 0 944
ENSMUST00000125964 Ube2m-005 protein_coding Mus_musculus 0 856
ENSMUST00000138357 Ube2m-003 retained_intron Mus_musculus 0 568
ENSMUST00000123541 Ube2m-007 protein_coding Mus_musculus 0 455
ENSMUST00000156389 Ube2m-002 protein_coding Mus_musculus 0 329
ENSMUST00000126827 Ube2m-006 processed_transcript Mus_musculus 9e-35 152

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