C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: huntingtin interacting protein 1 related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253083 HIP1R-001 ENSG00000130787 9606 + 12:122835426-122862960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253083
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253083 13.914±0.00 15.417±0.00 2.919±0.00 14.029±11.25 5.068±2.52 3.645±1.58 2.437±2.12 13.966±13.31 4.401±3.61 3.414±1.79 0.978±0.00 10.562±6.92 7.225±1.94 6.043±1.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0001 VISTA 12:122762377-123367178
CIL_0001EI CIL_0001EI_0001 CGP 12:122774327-122862960
CIL_0002PB CIL_0002PB_0001 CGP 12:122834453-122896444

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005905 IEA coated pit
GO:0006898 IMP receptor-mediated endocytosis
GO:0016020 IEA membrane
GO:0030136 IDA clathrin-coated vesicle
GO:0035091 IDA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000939 Hip1r-001 protein_coding Mus_musculus 0 3672
ENSMUST00000171407 Hip1r-004 retained_intron Mus_musculus 0 601
ENSMUST00000166258 Hip1r-003 nonsense_mediated_decay Mus_musculus 0 416
ENSMUST00000167325 Hip1r-005 retained_intron Mus_musculus 0 399
ENSMUST00000166684 Hip1r-006 retained_intron Mus_musculus 3e-34 152

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