C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253363 RBM39-002 ENSG00000131051 9606 - 20:35703610-35741951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungOvaryPlacentaENST00000253363
Transcript ID Brain Breast Heart Liver Lung Ovary Placenta
ENST00000253363 8.049±0.00 11.602±0.00 6.256±0.00 5.610±0.00 15.032±0.00 18.001±3.47 13.367±3.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WY CIL_0000WY_0001 CGP 20:35699272-35742312
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005815 IDA microtubule organizing center
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 TAS RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0015630 IDA microtubule cytoskeleton
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109587 Rbm39-001 protein_coding Mus_musculus 0 3265
ENSMUST00000029149 Rbm39-018 protein_coding Mus_musculus 0 3147
ENSMUST00000146297 Rbm39-003 protein_coding Mus_musculus 0 3145
ENSMUST00000155837 Rbm39-002 nonsense_mediated_decay Mus_musculus 0 2488
ENSMUST00000153514 Rbm39-025 nonsense_mediated_decay Mus_musculus 0 2401
ENSMUST00000142071 Rbm39-026 nonsense_mediated_decay Mus_musculus 0 1698
ENSMUST00000119414 Gm15575-001 processed_pseudogene Mus_musculus 0 1251
ENSMUST00000126992 Rbm39-020 protein_coding Mus_musculus 0 1184
ENSMUST00000182280 Gm8816-001 processed_pseudogene Mus_musculus 0 920
ENSMUST00000148794 Rbm39-019 protein_coding Mus_musculus 0 765
ENSMUST00000161037 Gm8837-001 processed_pseudogene Mus_musculus 0 693
ENSMUST00000135274 Rbm39-017 retained_intron Mus_musculus 0 590
ENSMUST00000138381 Rbm39-015 retained_intron Mus_musculus 0 512
ENSMUST00000131625 Rbm39-016 processed_transcript Mus_musculus 0 457
ENSMUST00000146288 Rbm39-021 protein_coding Mus_musculus 0 414
ENSMUST00000130516 Rbm39-006 retained_intron Mus_musculus 0 355
ENSMUST00000140001 Rbm39-010 processed_transcript Mus_musculus 0 305
ENSMUST00000150272 Rbm39-011 processed_transcript Mus_musculus 0 202
ENSMUST00000109584 Rbm39-022 protein_coding Mus_musculus 1.96182e-44 185
ENSMUST00000147098 Rbm39-013 nonsense_mediated_decay Mus_musculus 1.96182e-44 185
ENSMUST00000128243 Rbm39-012 retained_intron Mus_musculus 3e-22 111
ENSMUST00000154677 Rbm39-024 nonsense_mediated_decay Mus_musculus 1e-20 106
ENSMUST00000137340 Rbm39-004 retained_intron Mus_musculus 4e-20 104
ENSMUST00000152919 Rbm39-005 nonsense_mediated_decay Mus_musculus 4e-20 104
ENSMUST00000132929 Rbm39-007 retained_intron Mus_musculus 4e-20 104
ENSMUST00000137566 Rbm39-009 nonsense_mediated_decay Mus_musculus 4e-20 104
ENSMUST00000146549 Rbm39-008 nonsense_mediated_decay Mus_musculus 4e-20 104

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