C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 25 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253794 VPS25-001 ENSG00000131475 9606 + 17:42773436-42779599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253794
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253794 15.136±0.00 23.800±0.00 1.143±0.00 9.407±2.65 11.409±6.85 8.648±4.04 5.919±4.41 24.962±19.94 14.971±12.37 8.148±6.03 11.029±1.55 44.370±26.34 46.870±16.89 18.118±4.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JZ CIL_0004JZ_0001 CGP 17:42758447-42779599
CIL_0004HC CIL_0004HC_0001 CGP 17:42773436-42796936

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0010008 IDA endosome membrane
GO:0015031 IEA protein transport
GO:0016197 TAS endosomal transport
GO:0042803 IPI protein homodimerization activity
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042477 Vps25-001 protein_coding Mus_musculus 0 1323
ENSMUST00000128260 Ramp2-008 nonsense_mediated_decay Mus_musculus 0 1323
ENSMUST00000107280 Vps25-007 protein_coding Mus_musculus 0 968
ENSMUST00000121331 Vps25-004 protein_coding Mus_musculus 0 725
ENSMUST00000100414 Vps25-003 protein_coding Mus_musculus 0 667
ENSMUST00000007533 Vps25-002 protein_coding Mus_musculus 0 658
ENSMUST00000123529 Vps25-005 retained_intron Mus_musculus 0 438
ENSMUST00000144306 Vps25-006 nonsense_mediated_decay Mus_musculus 0 425

Loading