C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide A'
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254193 SNRPA1-001 ENSG00000131876 9606 - 15:101281510-101295251 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254193
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254193 7.409±0.00 19.372±0.00 2.748±1.32 3.690±0.00 3.801±2.34 3.168±3.03 8.625±0.00 6.133±0.00 11.619±0.00 4.746±0.00 15.439±6.34 16.780±3.84 15.009±0.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IDA spliceosomal complex
GO:0005686 TAS U2 snRNP
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000153609 Snrpa1-001 protein_coding Mus_musculus 0 1140
ENSMUST00000139082 Snrpa1-003 retained_intron Mus_musculus 0 619
ENSMUST00000032723 Snrpa1-002 nonsense_mediated_decay Mus_musculus 0 617
ENSMUST00000123157 Snrpa1-004 processed_transcript Mus_musculus 0 505

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