C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulatory factor X, 1 (influences HLA class II expression)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254325 HGNC:9982-001 ENSG00000132005 9606 - 19:13961538-14006285 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254325 3.692±0.00 3.212±0.00 0.416±0.00 1.384±0.00 2.474±2.22 0.560±0.13 1.312±1.05 0.688±0.32 1.421±0.00 0.071±0.00 3.010±0.00 2.394±2.06 6.005±0.50 7.012±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016Z CIL_00016Z_0002 CGP 19:13952492-14007039
CIL_00058X CIL_00058X_0002 CGP 19:13961538-14031042

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003705 TAS RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006955 TAS immune response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005600 Rfx1-201 protein_coding Mus_musculus 0 3411
ENSMUST00000086801 Rfx2-202 protein_coding Mus_musculus 0 632
ENSMUST00000002444 Rfx2-201 protein_coding Mus_musculus 0 632

Loading