C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3B (H3.3B)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254810 H3F3B-001 ENSG00000132475 9606 - 17:75776434-75779779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254810
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254810 33.682±0.00 129.909±0.00 8.435±0.00 71.541±51.55 45.715±22.21 37.396±16.58 11.268±5.49 29.212±23.74 11.682±6.70 72.258±42.13 12.857±1.99 118.346±76.38 30.116±12.96 55.127±27.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078Q CIL_00078Q_0001 CGP 17:75751594-75785893
CIL_00078R CIL_00078R_0001 CGP 17:75776434-75825799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IDA nuclear chromosome
GO:0000786 IEA nucleosome
GO:0000788 IDA nuclear nucleosome
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0007596 TAS blood coagulation
GO:0030307 IMP positive regulation of cell growth
GO:0031492 IDA nucleosomal DNA binding
GO:0043234 IDA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016703 H3f3b-201 protein_coding Mus_musculus 0 1770
ENSMUST00000106454 H3f3b-001 protein_coding Mus_musculus 0 1770
ENSMUST00000139623 H3f3b-002 processed_transcript Mus_musculus 0 726
ENSMUST00000160676 Gm6485-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000139378 H3f3b-003 processed_transcript Mus_musculus 0 435
ENSDART00000066545 h3f3a-202 protein_coding Danio_rerio 0 344
ENSDART00000137017 h3f3a-001 protein_coding Danio_rerio 0 344
ENSDART00000157370 hist2h3c-001 protein_coding Danio_rerio 0 327
ENSMUST00000122447 Gm12260-001 unprocessed_pseudogene Mus_musculus 0 292

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