C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hyaluronan and proteoglycan link protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255039 HAPLN2-001 ENSG00000132702 9606 + 1:156619294-156625725 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyMuscleOvaryPlacentaTestisENST00000255039
Transcript ID Adipose Brain Colon Kidney Muscle Ovary Placenta Testis
ENST00000255039 0.296±0.00 11.616±9.90 0.179±0.00 0.179±0.00 0.150±0.00 0.140±0.07 0.226±0.00 0.358±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492
CIL_0000CX CIL_0000CX_0002 CGP 1:156619294-156659532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0007155 IEA cell adhesion
GO:0008065 IEA establishment of blood-nerve barrier
GO:0031012 IEA extracellular matrix
GO:0085029 IEA extracellular matrix assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005014 Hapln2-001 protein_coding Mus_musculus 0 1182
ENSMUST00000160737 Hapln2-002 retained_intron Mus_musculus 0 1136
ENSMUST00000162352 Hapln2-004 retained_intron Mus_musculus 0 593
ENSMUST00000160150 Hapln2-003 nonsense_mediated_decay Mus_musculus 0 425

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