C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 6A, cGMP-specific, rod, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255266 PDE6A-001 ENSG00000132915 9606 - 5:149857956-149944793 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001JR CIL_0001JR_0002 CGP 5:149730298-149944793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004114 IEA 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0007165 IEA signal transduction
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0046037 IMP GMP metabolic process
GO:0046872 IEA metal ion binding
GO:0047555 IMP 3',5'-cyclic-GMP phosphodiesterase activity
GO:0051480 IMP cytosolic calcium ion homeostasis
GO:0060041 IEA retina development in camera-type eye
GO:0097381 TAS photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025468 Pde6a-001 protein_coding Mus_musculus 0 3033
ENSMUST00000135688 Pde6a-002 protein_coding Mus_musculus 0 532
ENSMUST00000025956 Pde6c-201 protein_coding Mus_musculus 0 403
ENSMUST00000112329 Pde6c-202 protein_coding Mus_musculus 0 265
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000008 58
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 57

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