C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255304 USPL1-001 ENSG00000132952 9606 + 13:30617783-30659549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255304 2.880±0.00 3.885±0.00 0.686±0.00 1.932±0.54 2.339±0.21 2.040±0.29 1.322±0.50 1.972±0.00 1.182±0.64 2.359±1.36 1.347±0.04 3.775±0.26 1.320±0.53 5.716±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CF CIL_0004CF_0001 CGP 13:30456704-30660770
CIL_0007UA CIL_0007UA_0001 VISTA 13:30490781-31093754
CIL_0004CN CIL_0004CN_0002 CGP 13:30617693-30764426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0006508 IEA proteolysis
GO:0008283 IMP cell proliferation
GO:0015030 IDA Cajal body
GO:0016926 IDA protein desumoylation
GO:0030576 IMP Cajal body organization
GO:0032183 IDA SUMO binding
GO:0070140 IDA SUMO-specific isopeptidase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121416 Uspl1-006 protein_coding Mus_musculus 0 826
ENSMUST00000126168 Uspl1-005 nonsense_mediated_decay Mus_musculus 0 826
ENSMUST00000119685 Uspl1-004 protein_coding Mus_musculus 0 826
ENSMUST00000122160 Uspl1-002 protein_coding Mus_musculus 0 826
ENSMUST00000050472 Uspl1-001 protein_coding Mus_musculus 0 826
ENSMUST00000150921 Uspl1-008 retained_intron Mus_musculus 0 702
ENSMUST00000117878 Uspl1-007 protein_coding Mus_musculus 0 702
ENSMUST00000100410 Uspl1-003 protein_coding Mus_musculus 0 702
ENSMUST00000149896 Uspl1-010 processed_transcript Mus_musculus 0 344

Loading