C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39, member 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000255559 SLC39A11-001 ENSG00000133195 9606 - 17:72645949-73092693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000255559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000255559 2.772±0.00 4.475±0.00 1.126±0.00 2.966±0.00 2.711±1.36 2.049±0.13 1.345±0.00 5.253±0.70 5.644±0.00 1.608±0.97 0.115±0.00 4.702±1.93 6.013±3.83 2.440±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096Z CIL_00096Z_0001 VISTA 17:72075015-72677314
CIL_00067E CIL_00067E_0001 CGP 17:72121020-73092712
CIL_00067F CIL_00067F_0001 CGP 17:72645949-73176633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006829 IEA zinc ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071539 Slc39a11-001 protein_coding Mus_musculus 0 1232
ENSMUST00000106633 Slc39a11-004 protein_coding Mus_musculus 0 1147
ENSMUST00000042657 Slc39a11-002 protein_coding Mus_musculus 0 739
ENSMUST00000125890 Slc39a11-007 protein_coding Mus_musculus 0 590
ENSMUST00000149034 Slc39a11-003 protein_coding Mus_musculus 0 496
ENSMUST00000146031 Slc39a11-005 protein_coding Mus_musculus 0 237
ENSMUST00000136392 Slc39a11-008 protein_coding Mus_musculus 6.02558e-44 183

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