C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256190 SBF2-001 ENSG00000133812 9606 - 11:9778667-10294207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256190
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256190 1.669±0.00 2.240±0.00 3.190±0.00 2.796±0.19 4.387±0.24 3.712±0.63 1.781±0.82 2.730±0.37 2.243±1.76 4.252±0.88 0.795±0.66 4.498±1.75 1.335±0.00 3.123±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0001 VISTA 11:9311967-9915183
CIL_0004J8 CIL_0004J8_0001 CGP 11:9664077-10294207
CIL_0004J7 CIL_0004J7_0001 CGP 11:9778667-10307397

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005774 IEA vacuolar membrane
GO:0008219 IEA cell death
GO:0016020 IDA membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0019208 IEA phosphatase regulator activity
GO:0019902 IEA phosphatase binding
GO:0032851 IDA positive regulation of Rab GTPase activity
GO:0035091 IEA phosphatidylinositol binding
GO:0042552 NAS myelination
GO:0042803 IEA protein homodimerization activity
GO:0051262 IEA protein tetramerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164759 Sbf2-001 protein_coding Mus_musculus 0 6999
ENSMUST00000033058 Sbf2-201 protein_coding Mus_musculus 0 5040
ENSMUST00000166020 Sbf2-002 protein_coding Mus_musculus 0 4499
ENSMUST00000165449 Sbf2-003 retained_intron Mus_musculus 0 2928
ENSMUST00000171378 Sbf2-004 retained_intron Mus_musculus 0 2571
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 2220
ENSMUST00000171218 Sbf2-007 protein_coding Mus_musculus 0 1618
ENSMUST00000165992 Sbf2-009 retained_intron Mus_musculus 0 881
ENSMUST00000164525 Sbf2-012 protein_coding Mus_musculus 0 782
ENSMUST00000169740 Sbf2-005 retained_intron Mus_musculus 0 688
ENSMUST00000164599 Sbf2-013 protein_coding Mus_musculus 0 630
ENSMUST00000164559 Sbf2-011 protein_coding Mus_musculus 0 575
ENSMUST00000167652 Sbf2-008 nonsense_mediated_decay Mus_musculus 0 466
ENSMUST00000166885 Sbf2-010 protein_coding Mus_musculus 0 204

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