C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CBP80/20-dependent translation initiation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256413 CTIF-001 ENSG00000134030 9606 + 18:48539046-48863217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000256413
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000256413 0.271±0.00 19.123±0.00 7.746±0.00 7.348±0.00 1.278±0.92 2.523±1.23 1.473±1.25 4.215±0.00 11.736±6.98 5.606±1.03 2.956±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P6 CIL_0008P6_0001 VISTA 18:48477632-49083007
CIL_0007UR CIL_0007UR_0001 VISTA 18:48480781-49082143
CIL_0000B3 CIL_0000B3_0002 CGP 18:48539046-48950711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IMP nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0006446 IMP regulation of translational initiation
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165559 Ctif-201 protein_coding Mus_musculus 0 1605
ENSDART00000127740 CTIF-201 protein_coding Danio_rerio 1e-34 154

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