C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256682 ARF3-001 ENSG00000134287 9606 - 12:48935723-48957551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256682 48.703±0.00 47.877±0.00 5.461±0.00 20.100±0.00 23.546±13.35 23.215±17.40 6.905±5.60 28.927±25.86 13.844±0.00 31.621±27.60 4.060±0.00 39.930±20.06 42.364±6.60 43.318±11.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000G CIL_00000G_0001 CGP 12:48935723-48971763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003924 TAS:IEA GTPase activity
GO:0004871 IEA signal transducer activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006184 TAS GTP catabolic process
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0006886 IEA intracellular protein transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0019001 IEA guanyl nucleotide binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053183 Arf3-001 protein_coding Mus_musculus 0 1371
ENSDART00000149762 arf2-003 protein_coding Danio_rerio 0 510
ENSDART00000016407 arf2-001 protein_coding Danio_rerio 0 510
ENSMUST00000163300 Arf1-201 protein_coding Mus_musculus 0 494
ENSMUST00000061242 Arf1-001 protein_coding Mus_musculus 0 494
ENSMUST00000191395 RP24-316C22.1-001 processed_pseudogene Mus_musculus 0 370
ENSDART00000149258 arf2-002 protein_coding Danio_rerio 0 327
ENSMUST00000156572 Arf3-003 protein_coding Mus_musculus 0 274
ENSMUST00000129354 Arf3-002 processed_transcript Mus_musculus 0 250

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