C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger and CCCH-type domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258349 RC3H1-201 ENSG00000135870 9606 - 1:173931214-173993064 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000258349
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000258349 1.180±0.00 0.688±0.00 1.116±0.00 1.456±0.00 0.946±0.54 1.328±0.00 2.777±0.00 0.539±0.29 0.727±0.39 3.176±0.00 0.102±0.00 1.517±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000932 ISS cytoplasmic mRNA processing body
GO:0000956 ISS nuclear-transcribed mRNA catabolic process
GO:0002634 ISS regulation of germinal center formation
GO:0002635 ISS negative regulation of germinal center formation
GO:0003730 ISS mRNA 3'-UTR binding
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0010494 ISS cytoplasmic stress granule
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0016567 TAS protein ubiquitination
GO:0030889 ISS negative regulation of B cell proliferation
GO:0033962 ISS cytoplasmic mRNA processing body assembly
GO:0043488 ISS regulation of mRNA stability
GO:0044822 IDA poly(A) RNA binding
GO:0045623 ISS negative regulation of T-helper cell differentiation
GO:0046007 ISS negative regulation of activated T cell proliferation
GO:0046872 IEA metal ion binding
GO:0050856 ISS regulation of T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161609 Rc3h1-001 protein_coding Mus_musculus 0 5090
ENSMUST00000035911 Rc3h1-002 protein_coding Mus_musculus 0 4340
ENSMUST00000161708 Rc3h1-003 retained_intron Mus_musculus 0 418
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000007 69

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