C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 56
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258772 DDX56-001 ENSG00000136271 9606 - 7:44565417-44574002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyOvaryPlacentaTestisENST00000258772
Transcript ID Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000258772 1.528±0.42 0.887±0.00 0.246±0.00 5.425±0.00 9.934±2.29 2.548±0.00 3.435±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000J3 CIL_0000J3_0001 CGP 7:44512535-44575051
CIL_0000J4 CIL_0000J4_0001 CGP 7:44565417-44582287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 TAS ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005730 IDA nucleolus
GO:0006200 TAS ATP catabolic process
GO:0006364 IEA rRNA processing
GO:0008152 IEA metabolic process
GO:0016020 IDA membrane
GO:0016787 IEA hydrolase activity
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004507 Ddx56-001 protein_coding Mus_musculus 0 1725
ENSMUST00000151446 Ddx56-002 protein_coding Mus_musculus 0 584

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