C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK2 homeobox 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258829 NKX2-8-001 ENSG00000136327 9606 - 14:36580579-36582607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLungOvaryTestisENST00000258829
Transcript ID Brain Breast Lung Ovary Testis
ENST00000258829 0.098±0.00 0.041±0.00 0.739±0.00 0.110±0.02 2.845±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00092P CIL_00092P_0001 VISTA 14:36045096-36646731
CIL_0008XR CIL_0008XR_0001 VISTA 14:36124115-36725121
CIL_0008R1 CIL_0008R1_0001 VISTA 14:36138356-36739990
CIL_00091S CIL_00091S_0001 VISTA 14:36141957-36745155
CIL_0007TC CIL_0007TC_0001 VISTA 14:36163945-36765327
CIL_0007XY CIL_0007XY_0001 VISTA 14:36204570-36805380
CIL_0007LS CIL_0007LS_0002 UCNEbase 14:36362793-37516218
CIL_0000SP CIL_0000SP_0001 CGP 14:36516392-36582607
CIL_00045C CIL_00045C_0001 CGP 14:36580579-36679715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 NAS liver development
GO:0003677 IEA DNA binding
GO:0003690 IDA double-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IDA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007409 IEA axonogenesis
GO:0030323 IEA respiratory tube development
GO:0030324 IEA lung development
GO:0043565 IDA sequence-specific DNA binding
GO:0050680 IEA negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072631 Nkx2-9-001 protein_coding Mus_musculus 0 643
ENSMUST00000067075 Nkx2-2-002 protein_coding Mus_musculus 0 200
ENSMUST00000109970 Nkx2-2-001 protein_coding Mus_musculus 0 200
ENSMUST00000067020 Nkx2-4-001 protein_coding Mus_musculus 8e-40 169
ENSMUST00000001536 Nkx2-1-002 protein_coding Mus_musculus 8e-35 152
ENSMUST00000178477 Nkx2-1-001 protein_coding Mus_musculus 8e-35 152
ENSMUST00000015723 Nkx2-5-001 protein_coding Mus_musculus 3e-34 150
ENSDART00000005296 nkx2.9-001 protein_coding Danio_rerio 4e-28 130
ENSMUST00000046093 Hmx3-001 protein_coding Mus_musculus 0.0000001 62
ENSDART00000054822 nkx3.2-001 protein_coding Danio_rerio 0.0000005 60

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