C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 5-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259477 ARPC5L-001 ENSG00000136950 9606 + 9:124869205-124877717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259477 17.491±0.00 37.180±0.00 1.356±0.00 22.558±18.59 18.517±0.00 9.759±8.16 18.561±0.00 13.141±12.49 17.744±0.00 20.458±20.34 7.172±5.58 35.257±38.60 40.334±14.63 71.257±27.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00075E CIL_00075E_0001 CGP 9:124857880-124877733
CIL_0002C7 CIL_0002C7_0002 CGP 9:124862130-124948492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005885 IEA Arp2/3 protein complex
GO:0005925 IDA focal adhesion
GO:0008150 ND biological_process
GO:0015629 IEA actin cytoskeleton
GO:0030833 IEA regulation of actin filament polymerization
GO:0034314 IEA Arp2/3 complex-mediated actin nucleation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000090993 Arpc5l-201 protein_coding Mus_musculus 0 1020
ENSMUST00000112862 Arpc5l-001 protein_coding Mus_musculus 0 1018
ENSMUST00000135049 Arpc5l-003 processed_transcript Mus_musculus 0 797
ENSMUST00000141467 Arpc5l-002 processed_transcript Mus_musculus 0 691

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