C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 2B class IIb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259818 TUBB2B-001 ENSG00000137285 9606 - 6:3224261-3227735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyOvaryTestisENST00000259818
Transcript ID Bladder Brain Breast Colon Kidney Ovary Testis
ENST00000259818 1.594±0.00 72.656±33.17 4.670±0.00 6.955±0.00 9.045±0.00 8.395±0.00 4.785±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0001 VISTA 6:2946622-3549686
CIL_000823 CIL_000823_0001 VISTA 6:3049163-3652023
CIL_0003IU CIL_0003IU_0001 CGP 6:3153669-3231730
CIL_0003IV CIL_0003IV_0001 CGP 6:3224261-3303373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 2130
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1820
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1380
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1367
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1336
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1323
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1321
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1314
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1314
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1304
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1295
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1286
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1280
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1264
ENSDART00000024135 protein_coding Danio_rerio 0 1230
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1203
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 1179
ENSDART00000129104 protein_coding Danio_rerio 0 1160
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 1035
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 702
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 649
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 588

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