C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prolactin regulatory element binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260643 PREB-001 ENSG00000138073 9606 - 2:27130756-27134675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260643 16.383±0.00 22.254±0.00 1.029±0.00 5.845±0.00 24.566±14.43 6.291±0.00 5.221±3.74 19.919±0.00 19.139±0.00 7.912±4.22 17.644±0.00 25.260±23.74 18.688±4.37 20.903±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074840 Preb-001 protein_coding Mus_musculus 0 1463
ENSMUST00000088063 Preb-002 protein_coding Mus_musculus 0 1140
ENSMUST00000156351 Preb-008 retained_intron Mus_musculus 0 734
ENSMUST00000123211 Preb-006 retained_intron Mus_musculus 0 409
ENSMUST00000125986 Preb-005 processed_transcript Mus_musculus 0 409
ENSMUST00000155946 Preb-012 retained_intron Mus_musculus 0 339
ENSMUST00000128093 Preb-010 processed_transcript Mus_musculus 0 327
ENSMUST00000135863 Preb-009 retained_intron Mus_musculus 0 244
ENSMUST00000127081 Preb-003 processed_transcript Mus_musculus 0 209
ENSMUST00000125524 Preb-007 retained_intron Mus_musculus 5e-34 150
ENSMUST00000148214 Preb-011 protein_coding Mus_musculus 8e-27 126

Loading