C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261015 WDR12-001 ENSG00000138442 9606 - 2:202874782-202912226 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261015 1.710±0.00 1.036±0.00 0.403±0.00 1.367±0.25 1.352±0.79 0.690±0.12 0.505±0.00 1.253±0.00 0.772±0.08 0.669±0.06 1.306±0.00 1.931±0.90 1.102±0.51 1.679±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0001 CGP 2:202773150-203014798
CIL_00020W CIL_00020W_0001 CGP 2:202874782-203014798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 IMP maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 IMP maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0007219 IEA Notch signaling pathway
GO:0008283 IMP cell proliferation
GO:0030687 IDA preribosome, large subunit precursor
GO:0042273 IC ribosomal large subunit biogenesis
GO:0043021 IEA ribonucleoprotein complex binding
GO:0070545 IDA PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117438 Wdr12-002 protein_coding Mus_musculus 0 1637
ENSMUST00000122038 Wdr12-003 protein_coding Mus_musculus 0 1637
ENSMUST00000027173 Wdr12-001 protein_coding Mus_musculus 0 1637
ENSMUST00000122190 Gm4879-001 processed_pseudogene Mus_musculus 0 1568
ENSMUST00000160031 Gm16300-001 processed_pseudogene Mus_musculus 0 981
ENSMUST00000141417 Wdr12-005 protein_coding Mus_musculus 0 556
ENSMUST00000143342 Wdr12-004 protein_coding Mus_musculus 0 556
ENSMUST00000147413 Wdr12-007 retained_intron Mus_musculus 0 198
ENSMUST00000136461 Wdr12-008 processed_transcript Mus_musculus 1e-34 154
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.0005 53

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