C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein, 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261401 CORO1C-001 ENSG00000110880 9606 - 12:108645109-108731596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000261401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000261401 21.327±0.00 7.527±0.00 1.024±0.00 18.208±0.00 23.656±21.23 20.213±14.79 7.976±0.00 6.095±3.17 16.055±9.86 0.481±0.00 20.300±12.10 15.546±4.09 22.564±15.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VQ CIL_0001VQ_0001 CGP 12:108622277-108731596
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0006909 TAS phagocytosis
GO:0007165 TAS signal transduction
GO:0015629 IEA:IBA actin cytoskeleton
GO:0030036 IEA:IBA actin cytoskeleton organization
GO:0042995 IEA cell projection
GO:0051015 IEA:IBA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004646 Coro1c-001 protein_coding Mus_musculus 0 1899
ENSMUST00000163995 Coro1c-008 retained_intron Mus_musculus 0 990
ENSMUST00000166647 Coro1c-006 processed_transcript Mus_musculus 0 822
ENSMUST00000164980 Coro1c-002 nonsense_mediated_decay Mus_musculus 0 813
ENSMUST00000168634 Coro1c-009 retained_intron Mus_musculus 0 710
ENSMUST00000168493 Coro1c-007 processed_transcript Mus_musculus 0 590
ENSMUST00000060680 2010001K21Rik-201 pseudogene Mus_musculus 0 424
ENSMUST00000163264 Coro1c-004 protein_coding Mus_musculus 0 307
ENSMUST00000172016 Coro1c-011 retained_intron Mus_musculus 0 235

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