C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor class B, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261693 SCARB1-004 ENSG00000073060 9606 - 12:124777633-124863847 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261693
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261693 49.681±0.00 11.885±0.00 4.679±0.00 29.577±0.00 7.799±6.45 3.693±0.00 8.931±5.47 96.184±0.00 7.621±0.00 1.392±0.00 51.088±52.18 187.351±138.18 6.303±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000399 CIL_000399_0001 CGP 12:124324415-124882668
CIL_00006N CIL_00006N_0002 CGP 12:124776856-124917368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001530 IDA lipopolysaccharide binding
GO:0001786 ISS phosphatidylserine binding
GO:0001875 IDA lipopolysaccharide receptor activity
GO:0001935 IEA endothelial cell proliferation
GO:0005215 TAS transporter activity
GO:0005515 IPI protein binding
GO:0005545 TAS 1-phosphatidylinositol binding
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0005901 TAS caveola
GO:0006702 IEA androgen biosynthetic process
GO:0006707 IEA cholesterol catabolic process
GO:0006869 IEA lipid transport
GO:0006898 IDA receptor-mediated endocytosis
GO:0006910 IEA phagocytosis, recognition
GO:0007155 IEA cell adhesion
GO:0008035 IEA high-density lipoprotein particle binding
GO:0009986 IEA cell surface
GO:0010595 TAS positive regulation of endothelial cell migration
GO:0010867 ISS positive regulation of triglyceride biosynthetic process
GO:0010886 IDA positive regulation of cholesterol storage
GO:0010899 ISS regulation of phosphatidylcholine catabolic process
GO:0015914 ISS phospholipid transport
GO:0015920 IDA lipopolysaccharide transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0030169 IDA low-density lipoprotein particle binding
GO:0030301 IEA cholesterol transport
GO:0030666 TAS endocytic vesicle membrane
GO:0031528 IEA microvillus membrane
GO:0031663 IDA lipopolysaccharide-mediated signaling pathway
GO:0032497 IDA detection of lipopolysaccharide
GO:0033344 ISS cholesterol efflux
GO:0034185 IPI apolipoprotein binding
GO:0034186 IPI apolipoprotein A-I binding
GO:0034375 ISS high-density lipoprotein particle remodeling
GO:0034383 ISS low-density lipoprotein particle clearance
GO:0034384 IDA high-density lipoprotein particle clearance
GO:0042060 TAS wound healing
GO:0042157 TAS lipoprotein metabolic process
GO:0042632 ISS cholesterol homeostasis
GO:0042803 IEA protein homodimerization activity
GO:0043534 IEA blood vessel endothelial cell migration
GO:0043654 IDA recognition of apoptotic cell
GO:0043691 IEP reverse cholesterol transport
GO:0044281 TAS small molecule metabolic process
GO:0044406 IMP adhesion of symbiont to host
GO:0050764 IC regulation of phagocytosis
GO:0051000 IDA positive regulation of nitric-oxide synthase activity
GO:0070062 IDA extracellular vesicular exosome
GO:0070328 ISS triglyceride homeostasis
GO:0070506 IDA high-density lipoprotein particle receptor activity
GO:0070508 ISS cholesterol import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086075 Scarb1-001 protein_coding Mus_musculus 0 1264
ENSMUST00000148373 Scarb1-003 retained_intron Mus_musculus 0 1031
ENSMUST00000111390 Scarb1-002 protein_coding Mus_musculus 0 1031
ENSMUST00000127148 Scarb1-005 protein_coding Mus_musculus 0 320

Loading