C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261890 RAB11A-001 ENSG00000103769 9606 + 15:65869458-65891991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261890
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261890 12.659±0.00 13.829±0.00 3.554±0.00 16.357±0.46 5.151±0.86 9.014±0.46 4.496±0.63 2.344±0.00 5.666±3.19 9.173±1.00 3.777±0.00 11.017±1.71 8.296±1.63 9.324±3.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VF CIL_0004VF_0002 CGP 15:65611366-65792293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 IMP cytokinesis
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005771 IDA multivesicular body
GO:0005802 IDA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0006184 IDA:IEA GTP catabolic process
GO:0006833 TAS water transport
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0010796 IMP regulation of multivesicular body size
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IDA vesicle-mediated transport
GO:0019905 NAS syntaxin binding
GO:0030133 IEA transport vesicle
GO:0030424 IEA axon
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0031175 IMP neuron projection development
GO:0031489 IPI myosin V binding
GO:0032154 IDA cleavage furrow
GO:0032402 ISS melanosome transport
GO:0036258 IMP multivesicular body assembly
GO:0043234 IDA protein complex
GO:0045335 IDA phagocytic vesicle
GO:0045773 IEA positive regulation of axon extension
GO:0048169 IEA regulation of long-term neuronal synaptic plasticity
GO:0048227 NAS plasma membrane to endosome transport
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051223 IEA regulation of protein transport
GO:0055037 ISS recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072659 IDA protein localization to plasma membrane
GO:0090150 IMP establishment of protein localization to membrane
GO:1990182 IMP exosomal secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172298 Rab11a-001 protein_coding Mus_musculus 0 2407
ENSMUST00000004892 Rab11a-005 protein_coding Mus_musculus 0 822
ENSMUST00000167569 Rab11a-004 protein_coding Mus_musculus 0 752
ENSMUST00000169058 Rab11a-002 protein_coding Mus_musculus 0 728
ENSMUST00000172444 Rab11a-008 retained_intron Mus_musculus 0 647
ENSMUST00000171100 Rab11a-006 protein_coding Mus_musculus 0 590
ENSMUST00000165083 Rab11a-003 processed_transcript Mus_musculus 0 527
ENSMUST00000166857 Rab11a-009 processed_transcript Mus_musculus 0 455
ENSMUST00000168366 Rab11a-007 protein_coding Mus_musculus 0 411
ENSMUST00000175682 Kdm2a-003 retained_intron Mus_musculus 0.0000000009 71
ENSMUST00000086274 Gm10490-201 protein_coding Mus_musculus 0.0000000009 71
ENSMUST00000189556 St8sia4-004 protein_coding Mus_musculus 0.000000003 69
ENSMUST00000093906 Birc5-002 protein_coding Mus_musculus 0.00000001 68
ENSMUST00000135387 Trim24-008 retained_intron Mus_musculus 0.00000004 66
ENSMUST00000108055 Kif24-001 protein_coding Mus_musculus 0.00000004 66
ENSMUST00000159758 Osbpl9-016 retained_intron Mus_musculus 0.00000004 66
ENSMUST00000114937 Usp6nl-001 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000156046 Znhit3-002 retained_intron Mus_musculus 0.000002 60
ENSMUST00000102975 Mob3b-001 protein_coding Mus_musculus 0.000002 60
ENSMUST00000146467 Ubxn6-005 retained_intron Mus_musculus 0.00002 57
ENSMUST00000151943 Ubxn6-002 retained_intron Mus_musculus 0.00002 57
ENSMUST00000132804 Ubxn6-003 retained_intron Mus_musculus 0.00002 57

Loading