C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262018 SGCA-001 ENSG00000108823 9606 + 17:50166005-50175931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262018
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262018 1.314±0.00 6.612±0.00 0.145±0.00 2.498±1.25 9.778±9.51 12.594±9.08 0.556±0.00 1.188±1.02 18.368±0.00 97.851±72.16 1.684±1.09 1.925±1.12 7.469±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X4 CIL_0004X4_0002 CGP 17:50164214-50201632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005911 IEA cell-cell junction
GO:0006936 IEA muscle contraction
GO:0007517 IEA muscle organ development
GO:0016010 TAS dystrophin-associated glycoprotein complex
GO:0016011 IEA dystroglycan complex
GO:0016012 IEA sarcoglycan complex
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0042383 IEA sarcolemma
GO:0045121 IEA membrane raft

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166320 Sgca-202 protein_coding Mus_musculus 0 1157
ENSMUST00000100551 Sgca-201 protein_coding Mus_musculus 0 1157
ENSMUST00000103162 Sgca-001 protein_coding Mus_musculus 0 1157

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