C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REST corepressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000262241 RCOR1-001 ENSG00000089902 9606 + 14:102592661-102730576 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262241 4.670±0.00 3.055±0.00 1.089±0.00 1.483±1.03 2.744±0.19 2.693±0.98 1.652±1.16 3.135±1.13 1.724±0.31 3.534±0.81 2.703±1.33 3.215±1.96 8.808±1.76 8.442±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AG CIL_0009AG_0001 VISTA 14:102447254-103047442
CIL_00040S CIL_00040S_0001 CGP 14:102501760-102730576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007596 TAS blood coagulation
GO:0016032 IEA viral process
GO:0017053 IDA transcriptional repressor complex
GO:0030218 IEA erythrocyte differentiation
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045654 IEA positive regulation of megakaryocyte differentiation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070933 IDA histone H4 deacetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084968 Rcor1-001 protein_coding Mus_musculus 0 2577
ENSMUST00000116388 Rcor1-201 protein_coding Mus_musculus 0 2230

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